Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10789707	0.95[ASN][1000 genomes]
rs10890930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890933	0.99[ASN][1000 genomes]
rs10890935	0.85[ASN][1000 genomes]
rs11212863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11212865	0.99[ASN][1000 genomes]
rs11212867	0.97[ASN][1000 genomes]
rs11212881	0.92[ASN][1000 genomes]
rs12288850	0.95[ASN][1000 genomes]
rs12576390	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs12577297	0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs1509728	0.88[CHB][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes]
rs1848755	0.99[ASN][1000 genomes]
rs2884181	0.86[ASN][1000 genomes]
rs3897724	0.88[CHB][hapmap];0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs4258339	0.88[CHB][hapmap];0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs7129123	0.91[ASN][1000 genomes]
rs72994761	0.98[ASN][1000 genomes]
rs949751	0.88[CHB][hapmap];0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs9633935	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
IgG glycosylation	23382691	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7101378	KDELC2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108892600-108893600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr11:108892600-108894600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: