Variant report

Variant	rs185384
Chromosome Location	chr5:16625354-16625355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr5:16625199-16625550	NB4	blood:	n/a	n/a
2	SPI1	chr5:16625010-16625639	HL-60	blood:	n/a	n/a
3	SPI1	chr5:16625283-16625445	K562	blood:	n/a	n/a
4	MAX	chr5:16625254-16625699	NB4	blood:	n/a	n/a
5	SPI1	chr5:16625266-16625419	GM12878	blood:	n/a	n/a
6	SPI1	chr5:16625226-16625569	GM12891	blood:	n/a	n/a
7	SPI1	chr5:16625153-16625612	HL-60	blood:	n/a	n/a
8	SPI1	chr5:16625306-16625445	GM12878	blood:	n/a	n/a
9	SPI1	chr5:16625162-16625439	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16616457..16619050-chr5:16623324..16626180,2	MCF-7	breast:
2	chr5:16625039..16627888-chr5:16628424..16629990,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201370	TF binding region
ENSG00000154153	Chromatin interaction
ENSG00000250415	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs181937	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs187275	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs256886	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs256893	0.91[CEU][hapmap]
rs257175	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35004	0.80[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs35005	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs410808	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs866884	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16617800-16625800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:16618600-16626200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:16618600-16627000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:16622600-16626200	Weak transcription	Left Ventricle	heart
5	chr5:16623200-16630600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:16624200-16625600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:16624200-16627000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:16624400-16626200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr5:16624400-16627400	Enhancers	Fetal Heart	heart
10	chr5:16624600-16627800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:16624800-16625800	Enhancers	Primary B cells from peripheral blood	blood
12	chr5:16625000-16625600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:16625000-16625600	Weak transcription	Right Atrium	heart
14	chr5:16625000-16625800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:16625000-16626000	Enhancers	Primary hematopoietic stem cells	blood
16	chr5:16625000-16626400	Enhancers	Right Ventricle	heart
17	chr5:16625200-16626400	Enhancers	Primary T cells from cord blood	blood
18	chr5:16625200-16626600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr5:16625200-16626800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr5:16625200-16627200	Enhancers	Brain Hippocampus Middle	brain
21	chr5:16625200-16627600	Enhancers	Brain Substantia Nigra	brain
22	chr5:16625200-16627800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr5:16625200-16631000	Enhancers	Thymus	Thymus

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