Variant report

Variant	rs35005
Chromosome Location	chr5:16618920-16618921
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:16618752-16618920	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
FAM134B	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs181937	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs185384	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs187275	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs256886	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs256893	0.81[CEU][hapmap]
rs257175	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35004	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs410808	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.80[TSI][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs866884	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16617600-16619000	Enhancers	Right Atrium	heart
2	chr5:16617800-16619200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:16617800-16619400	Enhancers	Fetal Thymus	thymus
4	chr5:16617800-16621600	Weak transcription	Left Ventricle	heart
5	chr5:16617800-16625800	Weak transcription	Brain Anterior Caudate	brain
6	chr5:16618000-16619000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr5:16618000-16619000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:16618000-16619200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:16618000-16619200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:16618000-16619200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:16618000-16619600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr5:16618000-16623200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr5:16618200-16619000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr5:16618200-16619000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr5:16618200-16619000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr5:16618200-16619200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:16618200-16619600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr5:16618200-16619800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:16618400-16619400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr5:16618400-16619400	Enhancers	Fetal Intestine Small	intestine
21	chr5:16618400-16619800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr5:16618400-16620000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr5:16618400-16620200	Enhancers	Primary T cells from cord blood	blood
24	chr5:16618600-16619000	Weak transcription	Fetal Kidney	kidney
25	chr5:16618600-16619200	Enhancers	H9 Cell Line	embryonic stem cell
26	chr5:16618600-16619200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr5:16618600-16619800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr5:16618600-16619800	Enhancers	Thymus	Thymus
29	chr5:16618600-16626200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr5:16618600-16627000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:16618800-16619000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr5:16618800-16619400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:16618800-16620400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr5:16618800-16621000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr5:16618800-16621400	Weak transcription	Fetal Heart	heart

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