Variant report

Variant	rs35004
Chromosome Location	chr5:16617903-16617904
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr5:16617778-16618170	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr5:16617558-16618210	H1-hESC	embryonic stem cell:	n/a	n/a
3	SIN3A	chr5:16617498-16617915	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTBP2	chr5:16616058-16618204	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16615493..16618797-chr5:16619529..16623976,5	MCF-7	breast:

Variant related genes	Relation type
FAM134B	TF binding region
ENSG00000201370	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs181937	0.93[ASN][1000 genomes]
rs185384	0.80[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs187275	0.87[ASN][1000 genomes]
rs256886	0.89[ASN][1000 genomes]
rs257175	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs35005	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs410808	0.82[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs866884	0.82[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16615800-16618200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr5:16616000-16618000	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr5:16616400-16618000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr5:16616600-16618000	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:16617200-16618000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:16617200-16618200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:16617400-16618000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
8	chr5:16617400-16618000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:16617400-16618000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:16617400-16618000	Flanking Active TSS	Primary B cells from peripheral blood	blood
11	chr5:16617400-16618000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:16617400-16618000	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr5:16617400-16618200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr5:16617400-16618200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:16617400-16618400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr5:16617400-16618400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
17	chr5:16617400-16618600	Flanking Active TSS	Thymus	Thymus
18	chr5:16617400-16618800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr5:16617400-16618800	Enhancers	Fetal Heart	heart
20	chr5:16617600-16618000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
21	chr5:16617600-16618000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr5:16617600-16618000	Active TSS	Primary T cells from cord blood	blood
23	chr5:16617600-16618000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:16617600-16618000	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr5:16617600-16618200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:16617600-16618200	Enhancers	Pancreas	Pancrea
27	chr5:16617600-16618400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr5:16617600-16618400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
29	chr5:16617600-16618400	Weak transcription	Fetal Kidney	kidney
30	chr5:16617600-16619000	Enhancers	Right Atrium	heart
31	chr5:16617800-16618000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr5:16617800-16618000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
33	chr5:16617800-16618000	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:16617800-16618000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr5:16617800-16618000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr5:16617800-16618000	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr5:16617800-16618000	Active TSS	Brain Germinal Matrix	brain
38	chr5:16617800-16618000	Enhancers	Brain Hippocampus Middle	brain
39	chr5:16617800-16618000	Enhancers	Colonic Mucosa	Colon
40	chr5:16617800-16618000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr5:16617800-16618000	Enhancers	A549	lung
42	chr5:16617800-16618000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr5:16617800-16618200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
44	chr5:16617800-16618200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
45	chr5:16617800-16618200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr5:16617800-16618200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:16617800-16618200	Enhancers	Duodenum Mucosa	Duodenum
48	chr5:16617800-16618200	Enhancers	Fetal Brain Female	brain
49	chr5:16617800-16618200	Bivalent Enhancer	Dnd41	blood
50	chr5:16617800-16618400	Weak transcription	Colon Smooth Muscle	Colon

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