Variant report

Variant	rs256886
Chromosome Location	chr5:16623740-16623741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs181937	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs185384	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs187275	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs257175	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35004	0.89[ASN][1000 genomes]
rs35005	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs410808	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs866884	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16617800-16625800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:16618600-16626200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:16618600-16627000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:16619800-16625000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:16619800-16625200	Weak transcription	Thymus	Thymus
6	chr5:16620200-16625200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:16620400-16625200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:16621000-16625200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:16622600-16626200	Weak transcription	Left Ventricle	heart
10	chr5:16623000-16624400	Weak transcription	Fetal Heart	heart
11	chr5:16623200-16623800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr5:16623200-16630600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:16623400-16623800	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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