Variant report

Variant	rs1857114
Chromosome Location	chr6:82708713-82708714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10806231	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10806232	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10806233	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10806234	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10943838	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10943841	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10943845	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12199470	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12212514	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213171	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12215152	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12525526	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1342193	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1361686	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1361688	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1857115	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1935416	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2185729	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2323536	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2875088	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4262223	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4292569	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4637689	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4706148	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4706149	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4706150	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4706914	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4706915	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6937709	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6939071	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7754923	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7770981	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82704400-82709400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:82705000-82709600	Enhancers	NH-A	brain
3	chr6:82705400-82710800	Enhancers	HMEC	breast
4	chr6:82705800-82709000	Weak transcription	HepG2	liver
5	chr6:82706000-82709200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:82706200-82715000	Weak transcription	Placenta	Placenta
7	chr6:82706800-82709200	Enhancers	NHDF-Ad	bronchial
8	chr6:82707000-82709400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:82707000-82710600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:82707400-82709600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:82707400-82710000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:82707400-82710800	Enhancers	NHEK	skin
13	chr6:82707600-82709200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:82707600-82709200	Enhancers	Hela-S3	cervix
15	chr6:82707600-82715200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:82707800-82714000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:82708000-82708800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:82708000-82708800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:82708000-82709000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:82708200-82709000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:82708200-82709400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:82708200-82709600	Enhancers	Osteobl	bone
23	chr6:82708200-82710400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:82708200-82722400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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