Variant report

Variant	rs7754923
Chromosome Location	chr6:82711841-82711842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10755418	0.82[EUR][1000 genomes]
rs10806231	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10806232	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10806233	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10806234	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10943838	0.96[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10943841	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10943842	0.82[EUR][1000 genomes]
rs10943845	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12199470	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12212514	0.95[CEU][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12213171	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12215152	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12525526	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1342193	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1361686	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1361688	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1418299	0.82[EUR][1000 genomes]
rs1418300	0.82[EUR][1000 genomes]
rs1418301	0.83[EUR][1000 genomes]
rs1857114	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1857115	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1935416	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2185729	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2323536	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2875088	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4262223	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4292569	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4637689	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706148	0.86[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706149	0.96[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706150	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706914	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706915	0.96[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706917	0.82[EUR][1000 genomes]
rs6903637	0.83[EUR][1000 genomes]
rs6937709	0.96[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6939071	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7770981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7754923	FAM46A	cis	cerebellum	SCAN
rs7754923	TBX18	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82706200-82715000	Weak transcription	Placenta	Placenta
2	chr6:82707600-82715200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:82707800-82714000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:82708200-82722400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:82709200-82713200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:82709200-82715200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:82709400-82723000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:82711800-82715000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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