Variant report

Variant	rs4706917
Chromosome Location	chr6:82715016-82715017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10755418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10806231	0.80[EUR][1000 genomes]
rs10806232	0.81[EUR][1000 genomes]
rs10806233	0.81[EUR][1000 genomes]
rs10806234	0.82[EUR][1000 genomes]
rs10943838	0.81[EUR][1000 genomes]
rs10943841	0.81[EUR][1000 genomes]
rs10943842	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194197	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12199519	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12212514	0.81[EUR][1000 genomes]
rs12213171	0.82[EUR][1000 genomes]
rs12215152	0.82[EUR][1000 genomes]
rs12525526	0.82[EUR][1000 genomes]
rs1342193	0.80[EUR][1000 genomes]
rs1361684	0.83[EUR][1000 genomes]
rs1361686	0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs1361688	0.82[EUR][1000 genomes]
rs1418296	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1418299	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1418300	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1418301	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1857115	0.83[EUR][1000 genomes]
rs1935416	0.80[EUR][1000 genomes]
rs1935417	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1935418	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2185729	0.83[EUR][1000 genomes]
rs2211370	0.83[AMR][1000 genomes]
rs2323536	0.83[EUR][1000 genomes]
rs2875088	0.82[EUR][1000 genomes]
rs4262223	0.82[EUR][1000 genomes]
rs4292569	0.82[EUR][1000 genomes]
rs4449673	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4535596	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4540297	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4637689	0.82[EUR][1000 genomes]
rs4706148	0.82[EUR][1000 genomes]
rs4706149	0.82[EUR][1000 genomes]
rs4706150	0.82[EUR][1000 genomes]
rs4706914	0.82[EUR][1000 genomes]
rs4706915	0.82[EUR][1000 genomes]
rs6903637	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6913193	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937709	0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs6939071	0.82[EUR][1000 genomes]
rs7754923	0.82[EUR][1000 genomes]
rs7770981	0.83[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4706917	FAM46A	cis	cerebellum	SCAN
rs4706917	SH3BGRL2	cis	cerebellum	SCAN
rs4706917	TBX18	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82707600-82715200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:82708200-82722400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:82709200-82715200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:82709400-82723000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:82713800-82715600	Weak transcription	Right Atrium	heart
6	chr6:82714800-82715200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:82714800-82715200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:82715000-82715400	Enhancers	Adipose Nuclei	Adipose
9	chr6:82715000-82715800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:82715000-82716000	Enhancers	Placenta	Placenta

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