Variant report

Variant	rs1418296
Chromosome Location	chr6:82722804-82722805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82717022..82718588-chr6:82721247..82723634,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10755418	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10943842	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10943845	0.83[EUR][1000 genomes]
rs12194197	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12199519	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1342193	0.83[EUR][1000 genomes]
rs1361684	0.81[EUR][1000 genomes]
rs1418299	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418300	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418301	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1935416	0.83[EUR][1000 genomes]
rs1935417	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1935418	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2185729	0.80[EUR][1000 genomes]
rs2211370	0.80[AMR][1000 genomes]
rs4449673	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4535596	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4540297	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4706917	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903637	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6913193	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020783	chr6:82720632-82732325	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021793	chr6:82720632-82737456	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82709400-82723000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:82716000-82724400	Weak transcription	Right Atrium	heart
3	chr6:82721600-82727600	Enhancers	HUVEC	blood vessel
4	chr6:82721800-82723200	Weak transcription	NHEK	skin
5	chr6:82721800-82724200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:82722000-82723200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:82722400-82723000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:82722400-82724800	Enhancers	NHDF-Ad	bronchial
9	chr6:82722400-82728200	Enhancers	Hela-S3	cervix
10	chr6:82722600-82723000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:82722600-82725400	Enhancers	Aorta	Aorta
12	chr6:82722800-82723400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82722800-82723400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:82722800-82723800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:82722800-82724000	Enhancers	Liver	Liver
16	chr6:82722800-82727600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:82722800-82728000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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