Variant report

Variant	rs1418301
Chromosome Location	chr6:82700316-82700317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10755418	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10806231	0.81[EUR][1000 genomes]
rs10806232	0.82[EUR][1000 genomes]
rs10806233	0.82[EUR][1000 genomes]
rs10806234	0.83[EUR][1000 genomes]
rs10943838	0.82[EUR][1000 genomes]
rs10943841	0.82[EUR][1000 genomes]
rs10943842	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12194197	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199519	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12212514	0.82[EUR][1000 genomes]
rs12213171	0.81[EUR][1000 genomes]
rs12215152	0.83[EUR][1000 genomes]
rs12525526	0.83[EUR][1000 genomes]
rs1361684	0.84[EUR][1000 genomes]
rs1361686	0.84[EUR][1000 genomes]
rs1361688	0.83[EUR][1000 genomes]
rs1418296	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418299	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418300	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857115	0.84[EUR][1000 genomes]
rs1935417	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1935418	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2185729	0.82[EUR][1000 genomes]
rs2211370	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2323536	0.84[EUR][1000 genomes]
rs2875088	0.83[EUR][1000 genomes]
rs4262223	0.83[EUR][1000 genomes]
rs4292569	0.83[EUR][1000 genomes]
rs4449673	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4535596	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4540297	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4637689	0.83[EUR][1000 genomes]
rs4706148	0.83[EUR][1000 genomes]
rs4706149	0.83[EUR][1000 genomes]
rs4706150	0.83[EUR][1000 genomes]
rs4706914	0.83[EUR][1000 genomes]
rs4706915	0.83[EUR][1000 genomes]
rs4706917	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6903637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913193	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6937709	0.84[EUR][1000 genomes]
rs6939071	0.83[EUR][1000 genomes]
rs7754923	0.83[EUR][1000 genomes]
rs7770981	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358208	chr6:82677282-82700658	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82695200-82704400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:82698800-82704400	Weak transcription	Muscle Satellite Cultured Cells	--

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