The 2.0 version of rSNPBase

Variant report

Variant rs186078
Chromosome Location chr5:58850876-58850877
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58836600-58854400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr5:58836800-58857400 Weak transcription Primary B cells from cord blood blood
3 chr5:58840000-58851600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr5:58840200-58858800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr5:58840400-58853200 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr5:58840400-58856200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr5:58840600-58851400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr5:58840800-58858600 Weak transcription Fetal Kidney kidney
9 chr5:58843800-58862400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr5:58844000-58851600 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr5:58844400-58854600 Weak transcription Fetal Lung lung
12 chr5:58844800-58851400 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr5:58844800-58854400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr5:58845200-58856200 Weak transcription Hela-S3 cervix
15 chr5:58845600-58858200 Weak transcription Pancreatic Islets Pancreatic Islet
16 chr5:58849000-58851600 Weak transcription Brain Angular Gyrus brain
17 chr5:58849400-58851000 Weak transcription Psoas Muscle Psoas
18 chr5:58850200-58851800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
19 chr5:58850200-58858200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr5:58850400-58856400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr5:58850400-58860800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr5:58850600-58851600 Weak transcription iPS-18 Cell Line embryonic stem cell
23 chr5:58850600-58856200 Weak transcription Fetal Intestine Large intestine
24 chr5:58850800-58851000 Enhancers Brain Substantia Nigra brain
25 chr5:58850800-58853800 Enhancers HUES48 Cell Line embryonic stem cell
26 chr5:58850800-58854800 Genic enhancers A549 lung
27 chr5:58850800-58856200 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015