The 2.0 version of rSNPBase

Variant report

Variant rs294495
Chromosome Location chr5:58878766-58878767
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58859200-58883400 Weak transcription Primary hematopoietic stem cells blood
2 chr5:58859400-58884000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr5:58867400-58879800 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr5:58870600-58879600 Weak transcription Small Intestine intestine
5 chr5:58872800-58880400 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr5:58873000-58879600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr5:58873000-58880000 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr5:58874400-58879400 Enhancers Fetal Intestine Large intestine
9 chr5:58874600-58879600 Weak transcription HUES48 Cell Line embryonic stem cell
10 chr5:58875000-58880000 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr5:58875600-58879600 Weak transcription Fetal Muscle Leg muscle
12 chr5:58875800-58880000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr5:58876000-58879000 Weak transcription Brain Inferior Temporal Lobe brain
14 chr5:58876000-58879400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr5:58876000-58879600 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr5:58876000-58879600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr5:58876200-58878800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr5:58876200-58879000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr5:58876200-58879200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr5:58876200-58879400 Weak transcription Brain Anterior Caudate brain
21 chr5:58876200-58879400 Weak transcription Brain Hippocampus Middle brain
22 chr5:58876400-58879400 Weak transcription Brain Angular Gyrus brain
23 chr5:58876600-58879400 Weak transcription Brain Cingulate Gyrus brain
24 chr5:58876600-58879400 Weak transcription Fetal Kidney kidney
25 chr5:58876800-58878800 Flanking Active TSS A549 lung
26 chr5:58877800-58879600 Enhancers Fetal Intestine Small intestine
27 chr5:58878200-58878800 Active TSS Fetal Brain Female brain
28 chr5:58878400-58879000 Enhancers Stomach Mucosa stomach
29 chr5:58878400-58882600 Enhancers Pancreatic Islets Pancreatic Islet
30 chr5:58878600-58878800 Flanking Active TSS Fetal Brain Male brain
31 chr5:58878600-58878800 Flanking Active TSS Psoas Muscle Psoas
32 chr5:58878600-58878800 Enhancers Skeletal Muscle Male skeletal muscle
33 chr5:58878600-58878800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
34 chr5:58878600-58879000 Active TSS Brain Dorsolateral Prefrontal Cortex brain
35 chr5:58878600-58879000 Enhancers Rectal Mucosa Donor 31 rectum
36 chr5:58878600-58879200 Enhancers Brain Substantia Nigra brain
37 chr5:58878600-58879400 Enhancers Rectal Smooth Muscle rectum
38 chr5:58878600-58879600 Enhancers Duodenum Mucosa Duodenum
39 chr5:58878600-58879600 Enhancers Hela-S3 cervix
40 chr5:58878600-58880000 Enhancers Liver Liver
41 chr5:58878600-58880000 Active TSS Brain Germinal Matrix brain
42 chr5:58878600-58880200 Enhancers Sigmoid Colon Sigmoid Colon
43 chr5:58878600-58880400 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
44 chr5:58878600-58880400 Enhancers Fetal Lung lung
45 chr5:58878600-58881400 Flanking Active TSS Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015