The 2.0 version of rSNPBase

Variant report

Variant rs294501
Chromosome Location chr5:58871353-58871354
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:26 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58859200-58883400 Weak transcription Primary hematopoietic stem cells blood
2 chr5:58859400-58871600 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr5:58859400-58884000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr5:58859800-58873800 Weak transcription HSMM muscle
5 chr5:58860200-58873600 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr5:58861800-58873000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr5:58861800-58874600 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr5:58862600-58874200 Weak transcription Fetal Brain Male brain
9 chr5:58863200-58878400 Weak transcription Stomach Mucosa stomach
10 chr5:58865600-58874400 Weak transcription H9 Cell Line embryonic stem cell
11 chr5:58865800-58874600 Weak transcription Hela-S3 cervix
12 chr5:58865800-58875400 Weak transcription Psoas Muscle Psoas
13 chr5:58866000-58874400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
14 chr5:58867200-58874400 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr5:58867400-58872800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr5:58867400-58874400 Weak transcription HUES48 Cell Line embryonic stem cell
17 chr5:58867400-58874600 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr5:58867400-58875400 Weak transcription iPS-18 Cell Line embryonic stem cell
19 chr5:58867400-58879800 Weak transcription HUES64 Cell Line embryonic stem cell
20 chr5:58868000-58874400 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr5:58870000-58873400 Weak transcription Brain Cingulate Gyrus brain
22 chr5:58870400-58871400 Enhancers A549 lung
23 chr5:58870400-58873200 Enhancers Fetal Intestine Large intestine
24 chr5:58870600-58878600 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr5:58870600-58879600 Weak transcription Small Intestine intestine
26 chr5:58871000-58872200 Enhancers Fetal Intestine Small intestine

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Last update: Aug 31, 2015