Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1257342	0.94[ASN][1000 genomes]
rs1257360	0.99[ASN][1000 genomes]
rs1257362	0.99[ASN][1000 genomes]
rs1257363	0.99[ASN][1000 genomes]
rs1257364	0.99[ASN][1000 genomes]
rs1257366	0.99[ASN][1000 genomes]
rs16823279	0.83[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16823281	0.92[CHB][hapmap];0.96[CHD][hapmap];0.93[ASN][1000 genomes]
rs16823305	0.93[ASN][1000 genomes]
rs1946166	0.97[ASN][1000 genomes]
rs2091806	0.99[ASN][1000 genomes]
rs2381555	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2381556	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2381558	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap]
rs2593715	1.00[ASN][1000 genomes]
rs2707796	0.99[ASN][1000 genomes]
rs2707802	0.94[ASN][1000 genomes]
rs4142821	0.97[ASN][1000 genomes]
rs4662215	1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap]
rs58626411	0.84[ASN][1000 genomes]
rs59036247	0.94[ASN][1000 genomes]
rs6430044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs787162	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144632600-144635200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:144633200-144636400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:144633200-144636600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:144633400-144636000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:144633400-144636000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:144633400-144636200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:144633600-144634800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:144634000-144635000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:144634600-144634800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr2:144634600-144634800	Enhancers	Fetal Brain Male	brain
11	chr2:144634600-144635000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:144634600-144635000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:144634600-144636400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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