Variant report

Variant	rs16823281
Chromosome Location	chr2:144652145-144652146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr2:144651717-144652175	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144650324..144652627-chr2:144653426..144656403,2	K562	blood:

Variant related genes	Relation type
ENSG00000200287	TF binding region
ENSG00000200287	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1257342	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1257360	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1257362	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1257363	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1257364	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1257366	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1316847	0.94[EUR][1000 genomes]
rs16823279	0.92[CHB][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16823305	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868078	0.93[ASN][1000 genomes]
rs1882621	1.00[EUR][1000 genomes]
rs1882623	1.00[EUR][1000 genomes]
rs1946166	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2091806	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2141918	1.00[EUR][1000 genomes]
rs2178733	0.94[EUR][1000 genomes]
rs2178736	0.94[EUR][1000 genomes]
rs2204902	0.94[EUR][1000 genomes]
rs2381509	1.00[EUR][1000 genomes]
rs2381547	0.94[EUR][1000 genomes]
rs2381548	0.94[EUR][1000 genomes]
rs2381549	1.00[EUR][1000 genomes]
rs2381555	0.92[CHB][hapmap];1.00[EUR][1000 genomes]
rs2381556	0.92[CHB][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2381558	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2593715	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2707796	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2707802	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4142821	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4257339	0.94[EUR][1000 genomes]
rs4268884	1.00[EUR][1000 genomes]
rs4380171	0.94[EUR][1000 genomes]
rs4662215	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs4662349	0.94[EUR][1000 genomes]
rs4662350	0.94[EUR][1000 genomes]
rs58626411	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59036247	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6430044	0.93[ASN][1000 genomes]
rs6724189	0.94[EUR][1000 genomes]
rs6760461	0.94[EUR][1000 genomes]
rs7606749	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144649600-144657200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:144650600-144652400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr2:144650800-144652600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr2:144650800-144652600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr2:144651000-144652200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr2:144651200-144652600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links