Variant report

Variant	rs2141918
Chromosome Location	chr2:144585063-144585064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144583511..144585766-chr2:144591887..144594215,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1257342	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1257360	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1257362	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1257363	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1257364	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1257366	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1316847	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16823279	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16823281	0.92[CHB][hapmap];1.00[EUR][1000 genomes]
rs16823305	1.00[EUR][1000 genomes]
rs1882621	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1882623	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1946166	1.00[EUR][1000 genomes]
rs2091806	1.00[EUR][1000 genomes]
rs2178733	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2178736	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2204902	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2381509	1.00[EUR][1000 genomes]
rs2381547	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381548	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381549	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381555	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381556	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381558	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2593715	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2707796	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2707802	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4142821	1.00[EUR][1000 genomes]
rs4257339	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4268884	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380171	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4662215	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4662349	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4662350	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58626411	1.00[EUR][1000 genomes]
rs59036247	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6724189	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6760461	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7606749	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144574800-144591000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:144582800-144590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:144583000-144587400	Weak transcription	Fetal Stomach	stomach
4	chr2:144583200-144586400	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:144583600-144587200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:144584200-144586600	Weak transcription	Brain Germinal Matrix	brain
7	chr2:144584200-144589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:144584400-144589200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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