Variant report

Variant	rs4257339
Chromosome Location	chr2:144572317-144572318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1257342	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1257360	1.00[EUR][1000 genomes]
rs1257362	1.00[EUR][1000 genomes]
rs1257363	1.00[EUR][1000 genomes]
rs1257364	1.00[EUR][1000 genomes]
rs1257366	1.00[EUR][1000 genomes]
rs1316847	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16823279	0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs16823281	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs16823305	0.94[EUR][1000 genomes]
rs1882621	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882623	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1946166	0.94[EUR][1000 genomes]
rs2091806	0.94[EUR][1000 genomes]
rs2141918	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2178733	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178736	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2204902	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381509	0.94[EUR][1000 genomes]
rs2381547	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381548	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381549	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381555	1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381556	1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381558	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.80[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593715	0.94[EUR][1000 genomes]
rs2707796	0.94[EUR][1000 genomes]
rs2707802	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4142821	0.94[EUR][1000 genomes]
rs4268884	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4380171	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4662215	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4662349	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4662350	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58626411	0.94[EUR][1000 genomes]
rs59036247	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6724189	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6760461	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7606749	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144564000-144577800	Weak transcription	Fetal Brain Male	brain
2	chr2:144566600-144574200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:144566600-144574400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:144566600-144574400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:144570000-144573800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:144570200-144574200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links