Variant report

Variant	rs4662350
Chromosome Location	chr2:144559602-144559603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1257342	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1257360	1.00[EUR][1000 genomes]
rs1257362	1.00[EUR][1000 genomes]
rs1257363	1.00[EUR][1000 genomes]
rs1257364	1.00[EUR][1000 genomes]
rs1257366	1.00[EUR][1000 genomes]
rs1316847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16823279	0.94[EUR][1000 genomes]
rs16823281	0.94[EUR][1000 genomes]
rs16823305	0.94[EUR][1000 genomes]
rs1882621	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1882623	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1946166	0.94[EUR][1000 genomes]
rs2091806	0.94[EUR][1000 genomes]
rs2141918	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2178733	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178736	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2204902	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381509	0.94[EUR][1000 genomes]
rs2381547	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381548	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381549	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381555	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381556	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2381558	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2593715	0.94[EUR][1000 genomes]
rs2707796	0.94[EUR][1000 genomes]
rs2707802	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4142821	0.94[EUR][1000 genomes]
rs4257339	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4268884	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4380171	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4662215	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4662349	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58626411	0.94[EUR][1000 genomes]
rs59036247	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6724189	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6760461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7606749	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144553800-144564000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:144558600-144560000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:144558600-144560400	Weak transcription	Ovary	ovary
4	chr2:144559200-144561000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr2:144559200-144561400	Enhancers	NHLF	lung
6	chr2:144559200-144561800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:144559200-144562000	Enhancers	Fetal Lung	lung
8	chr2:144559400-144560400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:144559400-144564000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:144559600-144559800	Enhancers	GM12878-XiMat	blood
11	chr2:144559600-144560800	Enhancers	Osteobl	bone

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