Variant report

Variant	rs2178736
Chromosome Location	chr2:144590983-144590984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1257342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1257360	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1257362	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1257363	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1257364	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1257366	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1316847	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16823279	0.94[EUR][1000 genomes]
rs16823281	0.94[EUR][1000 genomes]
rs16823305	0.94[EUR][1000 genomes]
rs1882621	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1882623	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1946166	0.94[EUR][1000 genomes]
rs2091806	0.94[EUR][1000 genomes]
rs2141918	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178733	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2204902	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2381509	0.94[EUR][1000 genomes]
rs2381547	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381548	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381549	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381555	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381556	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381558	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2593715	0.94[EUR][1000 genomes]
rs2707796	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2707802	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4142821	0.94[EUR][1000 genomes]
rs4257339	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4268884	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380171	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4662215	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4662349	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4662350	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58626411	0.94[EUR][1000 genomes]
rs59036247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6724189	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6760461	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7606749	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144574800-144591000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:144589200-144591200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:144589600-144591400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:144590000-144591400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:144590000-144591800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr2:144590200-144591400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:144590200-144591400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:144590200-144591600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:144590400-144591200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr2:144590400-144591200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:144590400-144592000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:144590600-144591000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:144590600-144591000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:144590600-144591600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:144590600-144591600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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