Variant report

Variant	rs1882623
Chromosome Location	chr2:144566671-144566672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1257342	0.94[EUR][1000 genomes]
rs1257360	0.94[EUR][1000 genomes]
rs1257362	0.94[EUR][1000 genomes]
rs1257363	0.94[EUR][1000 genomes]
rs1257364	0.94[EUR][1000 genomes]
rs1257366	0.94[EUR][1000 genomes]
rs1316847	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16823279	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs16823281	0.88[CHB][hapmap];1.00[EUR][1000 genomes]
rs16823305	1.00[EUR][1000 genomes]
rs1882621	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1946166	1.00[EUR][1000 genomes]
rs2091806	1.00[EUR][1000 genomes]
rs2141918	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2178733	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2178736	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2204902	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2381509	1.00[EUR][1000 genomes]
rs2381547	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2381548	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2381549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2381555	1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2381556	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2381558	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2593715	1.00[EUR][1000 genomes]
rs2707796	1.00[EUR][1000 genomes]
rs2707802	1.00[EUR][1000 genomes]
rs4142821	1.00[EUR][1000 genomes]
rs4257339	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4268884	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4380171	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4662215	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4662349	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4662350	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58626411	1.00[EUR][1000 genomes]
rs59036247	0.94[EUR][1000 genomes]
rs6724189	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6760461	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7606749	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144564000-144577800	Weak transcription	Fetal Brain Male	brain
2	chr2:144564800-144567200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr2:144565200-144567200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:144565400-144567200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:144565400-144567800	Enhancers	HSMMtube	muscle
6	chr2:144566000-144569600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:144566600-144569800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:144566600-144574200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:144566600-144574400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:144566600-144574400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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