Variant report

Variant	rs58626411
Chromosome Location	chr2:144670970-144670971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144667965..144669703-chr2:144669954..144671489,2	MCF-7	breast:
2	chr2:144669898..144672819-chr2:144685231..144687697,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1257342	0.94[EUR][1000 genomes]
rs1257360	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1257362	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1257363	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1257364	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1257366	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1316847	0.94[EUR][1000 genomes]
rs16823279	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16823281	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16823305	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1868078	0.84[ASN][1000 genomes]
rs1882621	1.00[EUR][1000 genomes]
rs1882623	1.00[EUR][1000 genomes]
rs1946166	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2091806	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2141918	1.00[EUR][1000 genomes]
rs2178733	0.94[EUR][1000 genomes]
rs2178736	0.94[EUR][1000 genomes]
rs2204902	0.94[EUR][1000 genomes]
rs2381509	1.00[EUR][1000 genomes]
rs2381547	0.94[EUR][1000 genomes]
rs2381548	0.94[EUR][1000 genomes]
rs2381549	1.00[EUR][1000 genomes]
rs2381555	1.00[EUR][1000 genomes]
rs2381556	0.94[EUR][1000 genomes]
rs2381558	0.94[EUR][1000 genomes]
rs2593715	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2707796	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2707802	1.00[EUR][1000 genomes]
rs4142821	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4257339	0.94[EUR][1000 genomes]
rs4268884	1.00[EUR][1000 genomes]
rs4380171	0.94[EUR][1000 genomes]
rs4662215	0.94[EUR][1000 genomes]
rs4662349	0.94[EUR][1000 genomes]
rs4662350	0.94[EUR][1000 genomes]
rs59036247	0.94[EUR][1000 genomes]
rs6430044	0.84[ASN][1000 genomes]
rs6724189	0.94[EUR][1000 genomes]
rs6760461	0.94[EUR][1000 genomes]
rs7606749	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv583246	chr2:144670651-144691346	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144661400-144671600	Weak transcription	Ovary	ovary
2	chr2:144668000-144673800	Weak transcription	Fetal Lung	lung
3	chr2:144670600-144672000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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