Variant report

Variant	rs1869725
Chromosome Location	chr6:14965057-14965058
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14847583..14849591-chr6:14964580..14967097,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1869726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1869727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2147204	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2327868	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2762325	0.85[EUR][1000 genomes]
rs364686	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs365698	1.00[EUR][1000 genomes]
rs379943	0.97[EUR][1000 genomes]
rs396372	1.00[EUR][1000 genomes]
rs405232	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs415367	1.00[EUR][1000 genomes]
rs427232	1.00[EUR][1000 genomes]
rs432649	1.00[EUR][1000 genomes]
rs434413	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14933800-14969600	Weak transcription	Right Atrium	heart
2	chr6:14963000-14965200	Weak transcription	Fetal Kidney	kidney
3	chr6:14964600-14966400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:14964800-14965200	Active TSS	Brain Substantia Nigra	brain
5	chr6:14964800-14965400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:14964800-14965600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:14964800-14965600	Enhancers	Brain Angular Gyrus	brain
8	chr6:14964800-14965600	Enhancers	Brain Hippocampus Middle	brain
9	chr6:14964800-14965600	Enhancers	Fetal Stomach	stomach
10	chr6:14964800-14965800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:14964800-14965800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:14964800-14965800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr6:14964800-14966000	Enhancers	Brain Cingulate Gyrus	brain
14	chr6:14964800-14966000	Enhancers	Brain Germinal Matrix	brain
15	chr6:14964800-14966200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:14964800-14966400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:14964800-14966400	Enhancers	Fetal Brain Male	brain
18	chr6:14964800-14966400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr6:14964800-14966600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:14964800-14967000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr6:14964800-14967000	Enhancers	Fetal Muscle Leg	muscle
22	chr6:14964800-14968000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:14964800-14968600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:14964800-14968600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:14965000-14965600	Enhancers	Brain Anterior Caudate	brain
26	chr6:14965000-14965600	Enhancers	Fetal Brain Female	brain
27	chr6:14965000-14966000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:14965000-14966400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:14965000-14968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr6:14965000-14968600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:14965000-14968600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:14965000-14968600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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