Variant report

Variant	rs2327868
Chromosome Location	chr6:14966295-14966296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14847583..14849591-chr6:14964580..14967097,2	K562	blood:
2	chr6:14959260..14960865-chr6:14965257..14968015,3	K562	blood:
3	chr6:14959260..14962811-chr6:14965257..14968674,4	K562	blood:
4	chr6:14960895..14963438-chr6:14965726..14968229,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1869725	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1869726	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1869727	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2147204	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2762325	0.85[EUR][1000 genomes]
rs364686	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs365698	1.00[EUR][1000 genomes]
rs379943	0.97[EUR][1000 genomes]
rs396372	1.00[EUR][1000 genomes]
rs405232	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs415367	1.00[EUR][1000 genomes]
rs427232	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs432649	1.00[EUR][1000 genomes]
rs434413	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14933800-14969600	Weak transcription	Right Atrium	heart
2	chr6:14964600-14966400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:14964800-14966400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:14964800-14966400	Enhancers	Fetal Brain Male	brain
5	chr6:14964800-14966400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:14964800-14966600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:14964800-14967000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:14964800-14967000	Enhancers	Fetal Muscle Leg	muscle
9	chr6:14964800-14968000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:14964800-14968600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:14964800-14968600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:14965000-14966400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:14965000-14968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:14965000-14968600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr6:14965000-14968600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:14965000-14968600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:14965200-14966600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:14965200-14967000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:14965200-14967000	Enhancers	NHDF-Ad	bronchial
20	chr6:14965200-14967800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:14965200-14968200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:14965600-14967000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:14965800-14966400	Weak transcription	Fetal Kidney	kidney
24	chr6:14965800-14966800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:14965800-14968000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:14966000-14967000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:14966200-14966600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr6:14966200-14967000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:14966200-14967000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:14966200-14968800	Enhancers	Primary monocytes fromperipheralblood	blood

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