Variant report

Variant	rs379943
Chromosome Location	chr6:14951354-14951355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1869725	0.97[EUR][1000 genomes]
rs1869726	0.97[EUR][1000 genomes]
rs1869727	0.94[EUR][1000 genomes]
rs2147204	0.97[EUR][1000 genomes]
rs2327868	0.97[EUR][1000 genomes]
rs2661086	0.87[AFR][1000 genomes]
rs2762325	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs364686	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs365698	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs396372	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs405232	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs415367	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs427232	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs432649	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs434413	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14933600-14954000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14933600-14964800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:14933800-14969600	Weak transcription	Right Atrium	heart
4	chr6:14946600-14965000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:14948400-14953400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:14949200-14954000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:14949200-14955400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr6:14949400-14954200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:14951200-14951400	Flanking Active TSS	K562	blood
10	chr6:14951200-14952200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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