Variant report

Variant	rs1871026
Chromosome Location	chr3:110783005-110783006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11717706	0.93[AFR][1000 genomes]
rs11919892	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11929280	1.00[CEU][hapmap]
rs13060876	0.92[AFR][1000 genomes]
rs13061640	0.92[AFR][1000 genomes]
rs13072462	0.93[AFR][1000 genomes]
rs1381836	1.00[CEU][hapmap]
rs1382075	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1462790	0.81[AFR][1000 genomes]
rs1462795	0.81[AFR][1000 genomes]
rs1477841	0.95[CHB][hapmap];0.94[YRI][hapmap]
rs1477842	0.94[YRI][hapmap]
rs1477843	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs1477846	0.85[CEU][hapmap]
rs1477847	0.95[CHB][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs1477848	0.85[CEU][hapmap]
rs1477850	1.00[CEU][hapmap]
rs1477851	0.94[YRI][hapmap]
rs1477854	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1477855	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1547518	0.91[AFR][1000 genomes]
rs1585629	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1600059	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16857350	1.00[CEU][hapmap]
rs1903755	0.81[AFR][1000 genomes]
rs2126710	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2126711	0.99[ASN][1000 genomes]
rs2126712	0.99[ASN][1000 genomes]
rs2126713	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs2169643	1.00[CEU][hapmap]
rs2399373	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs28772911	0.87[ASN][1000 genomes]
rs4102676	0.81[AFR][1000 genomes]
rs4682229	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4682230	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4682231	0.95[CHB][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4682234	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap]
rs4682238	0.94[YRI][hapmap]
rs6437947	0.83[AFR][1000 genomes]
rs6437948	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap]
rs6437953	0.85[CEU][hapmap]
rs66845903	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6763050	1.00[CEU][hapmap]
rs6765948	0.88[ASN][1000 genomes]
rs6781480	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6790828	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6794645	0.94[YRI][hapmap]
rs7430600	0.93[YRI][hapmap]
rs7433877	1.00[CEU][hapmap]
rs7610760	1.00[YRI][hapmap]
rs7612572	0.93[AFR][1000 genomes]
rs7612667	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7620372	0.82[CEU][hapmap]
rs7623880	0.94[YRI][hapmap]
rs7632375	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7632388	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7648752	1.00[CEU][hapmap]
rs7653595	0.95[CHB][hapmap];0.88[YRI][hapmap]
rs873132	1.00[CEU][hapmap]
rs9288918	1.00[CEU][hapmap]
rs969940	1.00[CEU][hapmap]
rs9817950	0.82[AFR][1000 genomes]
rs9818950	0.99[ASN][1000 genomes]
rs9821335	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9826064	0.81[AFR][1000 genomes]
rs9828899	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs9837377	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9839674	0.81[AFR][1000 genomes]
rs9847598	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9866028	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[YRI][hapmap]
rs9876350	0.95[CHB][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs9877855	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9882945	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110765000-110788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:110775800-110786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:110777800-110789000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:110782200-110783800	Weak transcription	Ovary	ovary
5	chr3:110782400-110788200	Weak transcription	Fetal Intestine Small	intestine

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