Variant report

Variant	rs1880089
Chromosome Location	chr6:34983900-34983901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34981992..34984484-chr6:34985319..34987073,2	K562	blood:
2	chr6:34960537..34962092-chr6:34983517..34986049,2	K562	blood:
3	chr6:34976217..34981550-chr6:34982184..34986897,6	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1357518	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140419	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689088	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689090	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2689092	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689093	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820239	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
3	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:34960200-34988200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:34961000-34985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:34962200-34984800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:34962800-34985200	Weak transcription	Brain Germinal Matrix	brain
8	chr6:34963000-34985000	Weak transcription	Fetal Brain Female	brain
9	chr6:34963000-34985200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:34963000-34985400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:34963000-34985600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:34963000-34985600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr6:34963000-34985600	Weak transcription	NHEK	skin
14	chr6:34963000-34987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:34963000-34989400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:34963600-34990000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:34964200-34985400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:34965800-34985400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:34965800-34985400	Weak transcription	HepG2	liver
21	chr6:34966000-34985400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:34966400-34985000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:34967000-34984600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:34967000-34985200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:34967000-34985200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:34967000-34985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:34967000-34985200	Weak transcription	Thymus	Thymus
28	chr6:34967200-34985600	Weak transcription	Primary B cells from cord blood	blood
29	chr6:34971000-34984600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:34971000-34985200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:34971000-34988400	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:34971200-34984400	Weak transcription	Fetal Intestine Large	intestine
33	chr6:34971200-34984800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:34971200-34985000	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:34973200-34985400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:34975800-34985000	Weak transcription	Primary T cells from cord blood	blood
37	chr6:34977000-34984000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr6:34978400-34985600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:34978800-34985200	Enhancers	Brain Hippocampus Middle	brain
40	chr6:34979400-34985200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:34979600-34984200	Enhancers	HSMMtube	muscle
42	chr6:34979600-34984600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:34979800-34990800	Weak transcription	K562	blood
44	chr6:34979800-35002000	Weak transcription	GM12878-XiMat	blood
45	chr6:34980400-34984800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr6:34980600-34985400	Weak transcription	Dnd41	blood
47	chr6:34981400-34985200	Enhancers	Brain Substantia Nigra	brain
48	chr6:34981600-34984400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:34981600-34984600	Enhancers	HSMM	muscle
50	chr6:34981600-34984800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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