Variant report

Variant	rs2689090
Chromosome Location	chr6:34979317-34979318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34971798..34974202-chr6:34977654..34980250,2	K562	blood:
2	chr6:34976217..34981550-chr6:34982184..34986897,6	K562	blood:
3	chr6:34976709..34980316-chr6:34984375..34986897,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1357518	0.81[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs1880089	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1997775	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2140419	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2504163	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2504165	1.00[CEU][hapmap]
rs2689088	1.00[ASN][1000 genomes]
rs2689092	0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2689093	0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2820239	0.81[GIH][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646925	1.00[CEU][hapmap]
rs847854	1.00[CEU][hapmap]
rs847855	1.00[CEU][hapmap]
rs9296140	1.00[CEU][hapmap]
rs9469919	1.00[CEU][hapmap]
rs9469926	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
3	chr6:34932400-34981800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:34960200-34988200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:34961000-34985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:34961200-34983400	Weak transcription	Fetal Kidney	kidney
8	chr6:34961600-34982200	Weak transcription	Right Ventricle	heart
9	chr6:34962200-34982200	Weak transcription	Hela-S3	cervix
10	chr6:34962200-34984800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:34962800-34983600	Weak transcription	Osteobl	bone
12	chr6:34962800-34985200	Weak transcription	Brain Germinal Matrix	brain
13	chr6:34963000-34979400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:34963000-34982200	Weak transcription	Aorta	Aorta
15	chr6:34963000-34982200	Weak transcription	Pancreas	Pancrea
16	chr6:34963000-34982400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:34963000-34982400	Weak transcription	Fetal Stomach	stomach
18	chr6:34963000-34982600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:34963000-34985000	Weak transcription	Fetal Brain Female	brain
20	chr6:34963000-34985200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:34963000-34985400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:34963000-34985600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:34963000-34985600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:34963000-34985600	Weak transcription	NHEK	skin
25	chr6:34963000-34987800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:34963000-34989400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:34963200-34982200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:34963600-34981600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:34963600-34982000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:34963600-34982000	Weak transcription	Adipose Nuclei	Adipose
31	chr6:34963600-34983400	Weak transcription	Colonic Mucosa	Colon
32	chr6:34963600-34990000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:34964200-34985400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:34965800-34985400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:34965800-34985400	Weak transcription	HepG2	liver
37	chr6:34966000-34982200	Weak transcription	Left Ventricle	heart
38	chr6:34966000-34985400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:34966200-34982400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:34966400-34985000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:34967000-34980600	Weak transcription	Lung	lung
42	chr6:34967000-34982200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:34967000-34982200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:34967000-34982200	Weak transcription	Placenta	Placenta
45	chr6:34967000-34982400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:34967000-34983400	Weak transcription	Ovary	ovary
47	chr6:34967000-34984600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr6:34967000-34985200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:34967000-34985200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:34967000-34985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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