Variant report

Variant	rs2689092
Chromosome Location	chr6:35004756-35004757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35002561..35006786-chr6:35010332..35014287,4	K562	blood:
2	chr6:34982152..34983781-chr6:35004526..35006125,2	K562	blood:
3	chr6:35002495..35005140-chr6:35015377..35017563,2	K562	blood:
4	chr6:34980740..34983781-chr6:35003942..35006125,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1357518	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880089	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140419	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689088	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689090	0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2689093	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820239	1.00[CEU][hapmap];0.90[GIH][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:34986400-35011800	Weak transcription	Dnd41	blood
5	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:34987400-35015800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:34992800-35011800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:34993800-35006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:34993800-35014600	Weak transcription	Fetal Brain Male	brain
12	chr6:34994200-35014400	Weak transcription	NHLF	lung
13	chr6:34994400-35005400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:34994600-35036000	Weak transcription	K562	blood
15	chr6:34995000-35005600	Weak transcription	Osteobl	bone
16	chr6:34995000-35005800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:34995000-35013800	Weak transcription	Hela-S3	cervix
18	chr6:34996000-35015200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:34996200-35005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:34996200-35010000	Weak transcription	Ovary	ovary
21	chr6:34997800-35004800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:34998600-35008000	Weak transcription	Brain Angular Gyrus	brain
23	chr6:34999000-35005600	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:34999000-35008600	Weak transcription	Primary B cells from cord blood	blood
25	chr6:34999400-35007400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:34999800-35005000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:34999800-35007400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:34999800-35014600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:35000200-35004800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:35000200-35005600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:35000600-35008200	Weak transcription	HepG2	liver
32	chr6:35001000-35005600	Genic enhancers	HSMMtube	muscle
33	chr6:35001000-35005800	Enhancers	Aorta	Aorta
34	chr6:35001400-35005800	Enhancers	Right Ventricle	heart
35	chr6:35001600-35004800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr6:35001600-35005400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:35001600-35006000	Enhancers	Right Atrium	heart
38	chr6:35001800-35006400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:35002000-35004800	Enhancers	Adipose Nuclei	Adipose
40	chr6:35002000-35005200	Enhancers	GM12878-XiMat	blood
41	chr6:35002000-35005400	Enhancers	Duodenum Mucosa	Duodenum
42	chr6:35002000-35006200	Enhancers	Primary hematopoietic stem cells	blood
43	chr6:35002200-35004800	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr6:35002200-35004800	Enhancers	Fetal Lung	lung
45	chr6:35002200-35006200	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr6:35002200-35006200	Genic enhancers	Fetal Muscle Leg	muscle
47	chr6:35002200-35006400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr6:35002400-35004800	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr6:35002400-35005000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:35002600-35004800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links