Variant report

Variant	rs2689088
Chromosome Location	chr6:34989226-34989227
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34986567..34989328-chr6:34993280..34995092,2	K562	blood:
2	chr6:34981724..34983680-chr6:34987265..34989470,3	K562	blood:
3	chr6:34984374..34990603-chr6:34991816..34996687,6	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1357518	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880089	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140419	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689090	1.00[ASN][1000 genomes]
rs2689092	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2689093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820239	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
2	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:34963000-34989400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr6:34963600-34990000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:34963600-35006600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:34979800-34990800	Weak transcription	K562	blood
7	chr6:34979800-35002000	Weak transcription	GM12878-XiMat	blood
8	chr6:34982800-34991800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:34982800-34992200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:34983000-34991800	Weak transcription	HMEC	breast
11	chr6:34983600-34992000	Weak transcription	A549	lung
12	chr6:34983800-34992200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:34984800-34989600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:34984800-34991000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:34985000-34990800	Strong transcription	Primary T cells from cord blood	blood
16	chr6:34985000-34991400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr6:34985200-34989400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:34985200-34989400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:34985200-34990000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:34985200-34990200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:34985400-34989600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:34985400-34991000	Weak transcription	Hela-S3	cervix
23	chr6:34986000-34992200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:34986200-34989800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:34986200-34991800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:34986200-34991800	Weak transcription	NHDF-Ad	bronchial
27	chr6:34986200-34991800	Weak transcription	NHLF	lung
28	chr6:34986200-34992000	Weak transcription	NHEK	skin
29	chr6:34986200-34992200	Weak transcription	Osteobl	bone
30	chr6:34986200-34996400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:34986200-35015000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr6:34986400-34989400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr6:34986400-34990200	Genic enhancers	Placenta	Placenta
34	chr6:34986400-34990800	Genic enhancers	Liver	Liver
35	chr6:34986400-35011800	Weak transcription	Dnd41	blood
36	chr6:34986600-34991600	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr6:34986600-34992400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:34986600-34993000	Weak transcription	Esophagus	oesophagus
39	chr6:34986800-35014800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:34987000-34989800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:34987000-34991200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:34987000-35009000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:34987000-35015800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:34987200-34989600	Enhancers	Fetal Lung	lung
45	chr6:34987200-34990000	Strong transcription	Fetal Intestine Small	intestine
46	chr6:34987200-34990200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr6:34987200-34990800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:34987200-34990800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:34987200-34991800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:34987200-34992000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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