Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168850404..168853284-chr1:168854804..168857536,3	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1028642	0.87[CHB][hapmap]
rs10489363	0.96[CHB][hapmap];0.83[ASN][1000 genomes]
rs10489366	0.81[ASN][1000 genomes]
rs10919003	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10919004	0.94[ASN][1000 genomes]
rs12075656	0.81[ASN][1000 genomes]
rs12118438	0.86[ASN][1000 genomes]
rs12129163	0.83[ASN][1000 genomes]
rs12133503	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs12134579	0.86[ASN][1000 genomes]
rs12134708	0.96[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs12135979	0.86[ASN][1000 genomes]
rs12140895	0.94[ASN][1000 genomes]
rs12562255	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs1322497	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1322499	0.83[AFR][1000 genomes]
rs1407477	0.87[CHB][hapmap]
rs16861737	0.95[CHB][hapmap]
rs2065132	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2146205	0.82[CHB][hapmap]
rs2146206	0.86[ASN][1000 genomes]
rs2419395	0.96[CHB][hapmap]
rs7518480	0.96[CHB][hapmap];0.83[ASN][1000 genomes]
rs7537225	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs857643	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168847000-168858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:168849800-168852200	Enhancers	Fetal Lung	lung
3	chr1:168850200-168857600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:168850400-168852000	Enhancers	Fetal Heart	heart
5	chr1:168850800-168852000	Enhancers	Fetal Brain Male	brain
6	chr1:168851800-168856400	Weak transcription	Brain Germinal Matrix	brain

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