Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168827977..168831348-chr1:168831730..168835477,4	MCF-7	breast:
2	chr1:168812635..168815594-chr1:168827412..168829922,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489363	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs10919003	0.92[ASN][1000 genomes]
rs10919004	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12075656	0.81[ASN][1000 genomes]
rs12118438	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12133503	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs12134579	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12134708	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs12135979	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12140895	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12562255	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1322497	0.92[ASN][1000 genomes]
rs16861737	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1885555	0.83[ASN][1000 genomes]
rs2065132	0.90[ASN][1000 genomes]
rs2146206	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2419395	0.91[JPT][hapmap]
rs7518480	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs7537225	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs857643	0.92[ASN][1000 genomes]
rs857645	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168818800-168830600	Weak transcription	Stomach Mucosa	stomach

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