Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10489363	0.85[CHB][hapmap]
rs10919003	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10919004	0.86[ASN][1000 genomes]
rs12075656	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12118438	0.94[ASN][1000 genomes]
rs12129163	0.92[ASN][1000 genomes]
rs12133503	0.85[CHB][hapmap]
rs12134579	0.94[ASN][1000 genomes]
rs12134708	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12135979	0.94[ASN][1000 genomes]
rs12140895	0.86[ASN][1000 genomes]
rs12562255	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs1407477	0.80[MEX][hapmap]
rs16861737	0.85[CHB][hapmap]
rs1885555	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2065132	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2146206	0.94[ASN][1000 genomes]
rs2419395	0.85[CHB][hapmap]
rs7518480	0.85[CHB][hapmap]
rs7537225	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs857643	0.98[ASN][1000 genomes]
rs857645	0.87[ASN][1000 genomes]
rs9651041	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1322497	SLC19A2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168838800-168843200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:168841600-168850400	Weak transcription	Fetal Heart	heart

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