Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168831234..168833463-chr1:168837204..168838715,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489363	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10919003	0.94[ASN][1000 genomes]
rs10919004	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12075656	0.84[ASN][1000 genomes]
rs12118438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12129163	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12133503	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs12134708	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap]
rs12135979	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140895	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12562255	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap]
rs1322497	0.94[ASN][1000 genomes]
rs16861737	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap]
rs1885555	0.86[ASN][1000 genomes]
rs2065132	0.93[ASN][1000 genomes]
rs2146206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2419395	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7518480	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7537225	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs857643	0.92[ASN][1000 genomes]
rs857645	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168836800-168838000	Enhancers	Pancreas	Pancrea
2	chr1:168837000-168837800	Enhancers	Stomach Mucosa	stomach
3	chr1:168837000-168838800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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