Variant report

Variant	rs857645
Chromosome Location	chr1:168830145-168830146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10919003	0.87[ASN][1000 genomes]
rs12075656	0.98[ASN][1000 genomes]
rs12118438	0.81[ASN][1000 genomes]
rs12129163	0.82[ASN][1000 genomes]
rs12134579	0.82[ASN][1000 genomes]
rs12135979	0.82[ASN][1000 genomes]
rs1322497	0.87[ASN][1000 genomes]
rs2065132	0.86[ASN][1000 genomes]
rs2146206	0.82[ASN][1000 genomes]
rs7537225	0.84[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs857643	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168818800-168830600	Weak transcription	Stomach Mucosa	stomach
2	chr1:168829800-168830200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:168829800-168831400	Enhancers	Fetal Intestine Large	intestine
4	chr1:168829800-168833600	Enhancers	HepG2	liver
5	chr1:168830000-168830400	Enhancers	Ovary	ovary
6	chr1:168830000-168830600	Enhancers	A549	lung
7	chr1:168830000-168831400	Enhancers	Fetal Intestine Small	intestine
8	chr1:168830000-168831800	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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