The 2.0 version of rSNPBase

Variant report

Variant rs1886539
Chromosome Location chr13:52726090-52726091
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:52703600-52730800 Weak transcription Stomach Mucosa stomach
2 chr13:52703600-52731000 Weak transcription Brain Angular Gyrus brain
3 chr13:52703600-52732600 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr13:52703600-52732800 Weak transcription Psoas Muscle Psoas
5 chr13:52703600-52733000 Weak transcription Esophagus oesophagus
6 chr13:52703800-52731200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr13:52703800-52731400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
8 chr13:52703800-52731400 Weak transcription Spleen Spleen
9 chr13:52703800-52732600 Weak transcription Primary T helper naive cells fromperipheralblood blood
10 chr13:52703800-52732600 Weak transcription HMEC breast
11 chr13:52703800-52733200 Weak transcription Gastric stomach
12 chr13:52704000-52733000 Weak transcription Fetal Thymus thymus
13 chr13:52704800-52727000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr13:52704800-52730000 Strong transcription Monocytes-CD14+_RO01746 blood
15 chr13:52706200-52731000 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr13:52706600-52730800 Weak transcription HUVEC blood vessel
17 chr13:52706600-52731000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr13:52706600-52732600 Weak transcription Primary B cells from peripheral blood blood
19 chr13:52706600-52732800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr13:52706600-52732800 Weak transcription Pancreas Pancrea
21 chr13:52707400-52731200 Weak transcription Primary B cells from cord blood blood
22 chr13:52707400-52732800 Weak transcription H1 Cell Line embryonic stem cell
23 chr13:52707600-52731600 Weak transcription H9 Cell Line embryonic stem cell
24 chr13:52707600-52732600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr13:52707800-52732600 Weak transcription A549 lung
26 chr13:52708000-52732600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr13:52708400-52732600 Weak transcription HSMMtube muscle
28 chr13:52708400-52732800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr13:52710400-52732800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
30 chr13:52712200-52733000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr13:52712400-52733000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr13:52717200-52726200 Strong transcription Fetal Intestine Large intestine
33 chr13:52720400-52726600 Strong transcription Adipose Nuclei Adipose
34 chr13:52720400-52727000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr13:52720600-52727000 Strong transcription Rectal Mucosa Donor 29 rectum
36 chr13:52720800-52728600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr13:52720800-52732400 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr13:52721000-52727000 Strong transcription Primary monocytes fromperipheralblood blood
39 chr13:52721200-52727000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr13:52721400-52726200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr13:52721800-52732600 Weak transcription NHEK skin
42 chr13:52722200-52726400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr13:52722400-52726800 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr13:52723000-52732600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr13:52723000-52732600 Weak transcription Muscle Satellite Cultured Cells --
46 chr13:52723400-52727000 Strong transcription Duodenum Smooth Muscle Duodenum
47 chr13:52723600-52726800 Strong transcription HUES64 Cell Line embryonic stem cell
48 chr13:52724000-52726400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr13:52724000-52727000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr13:52724000-52731000 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015