Variant report

Variant	rs2277448
Chromosome Location	chr13:52585548-52585549
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr13:52585404-52585743	HepG2	liver:	n/a	n/a
2	MAX	chr13:52585193-52586618	H1-hESC	embryonic stem cell:	n/a	chr13:52585522-52585533 chr13:52586465-52586475 chr13:52586074-52586084 chr13:52586244-52586254
3	FOXA2	chr13:52585488-52585769	A549	lung:	n/a	n/a
4	GTF2F1	chr13:52585327-52585585	H1-hESC	embryonic stem cell:	n/a	n/a
5	CHD2	chr13:52585455-52586705	HepG2	liver:	n/a	chr13:52586473-52586483 chr13:52586468-52586478 chr13:52586352-52586362
6	RFX5	chr13:52585524-52585564	HepG2	liver:	n/a	n/a
7	E2F6	chr13:52585251-52585552	K562	blood:	n/a	n/a
8	SIN3AK20	chr13:52585450-52585661	HepG2	liver:	n/a	n/a
9	ZBTB7A	chr13:52585322-52586829	ECC-1	luminal epithelium:	n/a	chr13:52586537-52586548 chr13:52585632-52585639
10	POLR2A	chr13:52585282-52586896	HepG2	liver:	n/a	n/a
11	MAX	chr13:52585033-52586745	K562	blood:	n/a	chr13:52585522-52585533 chr13:52586465-52586475 chr13:52586074-52586084 chr13:52586244-52586254
12	EP300	chr13:52585431-52585599	HepG2	liver:	n/a	n/a
13	E2F6	chr13:52585483-52585633	K562	blood:	n/a	n/a
14	MAX	chr13:52585114-52586687	K562	blood:	n/a	chr13:52585522-52585533 chr13:52586465-52586475 chr13:52586074-52586084 chr13:52586244-52586254
15	HMGN3	chr13:52585268-52586527	K562	blood:	n/a	n/a
16	POLR2A	chr13:52585205-52586953	HepG2	liver:	n/a	n/a
17	POLR2A	chr13:52585346-52586916	H1-hESC	embryonic stem cell:	n/a	n/a
18	MXI1	chr13:52585254-52586927	HepG2	liver:	n/a	n/a
19	TBP	chr13:52585493-52586789	H1-hESC	embryonic stem cell:	n/a	n/a
20	TCF7L2	chr13:52585440-52586647	HCT-116	colon:	n/a	n/a
21	ZBTB7A	chr13:52585367-52586863	ECC-1	luminal epithelium:	n/a	chr13:52586537-52586548 chr13:52585632-52585639
22	MAX	chr13:52585307-52586999	NB4	blood:	n/a	chr13:52585522-52585533 chr13:52586465-52586475 chr13:52586074-52586084 chr13:52586244-52586254
23	MYC	chr13:52585302-52586719	K562	blood:	n/a	chr13:52585522-52585533 chr13:52586465-52586475 chr13:52586074-52586084 chr13:52586244-52586254
24	MAX	chr13:52585242-52586640	ECC-1	luminal epithelium:	n/a	chr13:52585522-52585533 chr13:52586465-52586475 chr13:52586074-52586084 chr13:52586244-52586254
25	JUND	chr13:52585233-52585766	H1-hESC	embryonic stem cell:	n/a	n/a
26	MYC	chr13:52585365-52586968	NB4	blood:	n/a	chr13:52585522-52585533 chr13:52586465-52586475 chr13:52586074-52586084 chr13:52586244-52586254
27	RAD21	chr13:52585200-52585578	HepG2	liver:	n/a	n/a
28	POLR2A	chr13:52585203-52586920	K562	blood:	n/a	n/a
29	ZBTB7A	chr13:52585216-52586411	K562	blood:	n/a	chr13:52585632-52585639
30	BRCA1	chr13:52585470-52586243	HepG2	liver:	n/a	n/a
31	TAF1	chr13:52585333-52586708	HepG2	liver:	n/a	n/a
32	HNF4G	chr13:52585427-52586685	HepG2	liver:	n/a	chr13:52586170-52586192 chr13:52586175-52586187 chr13:52585611-52585619 chr13:52585512-52585527 chr13:52585518-52585530
33	POLR2A	chr13:52585438-52586864	MCF-7	breast:	n/a	n/a
34	TBP	chr13:52585357-52587016	HepG2	liver:	n/a	n/a
35	BHLHE40	chr13:52585400-52586712	K562	blood:	n/a	n/a
36	USF2	chr13:52585436-52585886	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr13:52585316-52585598	HepG2	liver:	n/a	n/a
38	UBTF	chr13:52585288-52586064	K562	blood:	n/a	n/a
39	POLR2A	chr13:52585327-52586973	PBDE	blood:	n/a	n/a
40	MXI1	chr13:52585378-52585578	H1-hESC	embryonic stem cell:	n/a	n/a
41	MAX	chr13:52585471-52585649	K562	blood:	n/a	chr13:52585522-52585533
42	E2F6	chr13:52585537-52586482	A549	lung:	n/a	chr13:52585691-52585700 chr13:52586349-52586361 chr13:52586233-52586242 chr13:52586336-52586348 chr13:52586467-52586476 chr13:52585802-52585812 chr13:52585959-52585970 chr13:52586205-52586214
43	POLR2A	chr13:52585390-52586845	MCF-7	breast:	n/a	n/a
44	YY1	chr13:52585439-52587072	SK-N-SH	brain:	n/a	chr13:52586041-52586055 chr13:52586067-52586078 chr13:52586467-52586476 chr13:52586044-52586053 chr13:52586205-52586214
45	BACH1	chr13:52585027-52586557	H1-hESC	embryonic stem cell:	n/a	n/a
46	HNF4A	chr13:52585389-52586624	HepG2	liver:	n/a	chr13:52586173-52586188 chr13:52586170-52586192 chr13:52586175-52586187 chr13:52585611-52585619 chr13:52585512-52585527 chr13:52585518-52585530
47	CTCF	chr13:52585460-52585610	HFF	foreskin:	n/a	n/a
48	FOXA2	chr13:52585436-52585772	A549	lung:	n/a	n/a
49	CTBP2	chr13:52585300-52586519	H1-hESC	embryonic stem cell:	n/a	n/a
50	RCOR1	chr13:52585460-52586690	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:52584477..52586900-chr13:52700506..52703372,3	K562	blood:
2	chr13:52025774..52028487-chr13:52584807..52587141,2	K562	blood:
3	chr13:52584551..52590049-chr13:52591418..52597330,6	K562	blood:
4	chr13:52585087..52587899-chr13:52598320..52601537,3	MCF-7	breast:
5	chr13:52584543..52591722-chr13:52593134..52598355,11	K562	blood:
6	chr13:52584477..52586943-chr13:52701489..52703372,3	K562	blood:

Variant related genes	Relation type
ALG11	TF binding region
ATP7B	TF binding region
ENSG00000224892	Chromatin interaction
ENSG00000253710	Chromatin interaction
ENSG00000253797	Chromatin interaction
ENSG00000197168	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 138 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1004576	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1055062	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1060631	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1134727	0.87[ASN][1000 genomes]
rs11620583	0.87[CHB][hapmap]
rs12146904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12431310	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12560598	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1571189	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs1801243	0.91[CHB][hapmap]
rs1886538	0.91[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1886539	0.85[ASN][1000 genomes]
rs1886542	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1886543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1886544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1886545	0.88[ASN][1000 genomes]
rs1886546	0.88[ASN][1000 genomes]
rs1886547	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1924611	0.87[CHB][hapmap]
rs2004866	0.91[CHB][hapmap]
rs2005182	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2147359	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2147360	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2147361	0.87[ASN][1000 genomes]
rs2181891	0.91[CHB][hapmap]
rs2274202	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2296347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2296348	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2296349	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2408544	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs2408546	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2408547	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2408548	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2408550	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2408551	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2408552	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2408554	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2408609	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2408611	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2897964	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2897965	0.84[ASN][1000 genomes]
rs2897977	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs3368	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs3742289	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742291	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3783242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3818422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3825528	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs4261421	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4264295	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4297592	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs4497567	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs4600369	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4941720	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4941723	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4941727	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4943060	0.84[ASN][1000 genomes]
rs61958804	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61958805	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6561656	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561658	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs6650384	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6650385	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66849828	0.82[ASN][1000 genomes]
rs7318287	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7319784	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320252	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7320429	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs732071	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7320831	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321120	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321310	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321435	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7321775	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7324458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7327634	0.91[CHB][hapmap]
rs7332272	0.85[ASN][1000 genomes]
rs7332356	0.88[ASN][1000 genomes]
rs7338131	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs747781	0.91[CHB][hapmap]
rs755363	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7981904	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7991237	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7995946	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7998770	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9316563	0.87[CHB][hapmap]
rs9526817	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9526819	0.87[CHB][hapmap]
rs9526823	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526826	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9526834	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9526835	0.84[ASN][1000 genomes]
rs9526836	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9526837	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9526841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9526842	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs9526843	0.85[ASN][1000 genomes]
rs9535812	0.91[CHB][hapmap]
rs9535813	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9535816	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9535821	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535822	0.86[CHB][hapmap]
rs9535824	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9535825	0.91[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs9535826	0.87[CHB][hapmap]
rs9535832	0.91[CHB][hapmap]
rs9535836	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535845	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535851	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535853	0.88[ASN][1000 genomes]
rs9535856	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535858	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535861	0.91[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs9535862	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535866	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535867	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535871	0.83[ASN][1000 genomes]
rs9535873	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535878	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535879	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs9535880	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535882	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs9535885	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs9535887	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535889	0.81[ASN][1000 genomes]
rs9563089	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9568682	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568684	0.83[CEU][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568692	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568713	0.91[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv900082	chr13:52555288-52709938	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2277448	ALG11	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52583600-52587400	Active TSS	Fetal Intestine Small	intestine
2	chr13:52584200-52585600	Flanking Active TSS	Liver	Liver
3	chr13:52584200-52585800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr13:52584400-52585600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:52584400-52587200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr13:52584400-52587400	Active TSS	Brain Anterior Caudate	brain
7	chr13:52584400-52587400	Active TSS	Right Ventricle	heart
8	chr13:52584400-52587600	Active TSS	Right Atrium	heart
9	chr13:52584400-52587800	Active TSS	Brain Angular Gyrus	brain
10	chr13:52584600-52585600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr13:52584600-52587400	Active TSS	Stomach Smooth Muscle	stomach
12	chr13:52584600-52587800	Active TSS	Fetal Brain Female	brain
13	chr13:52584800-52586000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr13:52584800-52586000	Active TSS	Fetal Brain Male	brain
15	chr13:52584800-52587600	Active TSS	NHDF-Ad	bronchial
16	chr13:52584800-52588000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:52584800-52588000	Active TSS	K562	blood
18	chr13:52585000-52585600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr13:52585000-52585600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr13:52585000-52585600	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr13:52585000-52585600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr13:52585000-52585600	Flanking Active TSS	HMEC	breast
23	chr13:52585000-52585800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
24	chr13:52585000-52585800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
25	chr13:52585000-52585800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr13:52585000-52586000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:52585000-52586000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
28	chr13:52585000-52586000	Bivalent/Poised TSS	Thymus	Thymus
29	chr13:52585000-52586200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr13:52585000-52587200	Active TSS	Fetal Kidney	kidney
31	chr13:52585000-52587200	Active TSS	Rectal Smooth Muscle	rectum
32	chr13:52585000-52587400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:52585000-52587400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:52585000-52587400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr13:52585000-52587400	Active TSS	Ovary	ovary
36	chr13:52585000-52587400	Active TSS	Psoas Muscle	Psoas
37	chr13:52585000-52587600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
38	chr13:52585200-52585600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:52585200-52585600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:52585200-52585600	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:52585200-52585600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
42	chr13:52585200-52585600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
43	chr13:52585200-52585600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
44	chr13:52585200-52585600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
45	chr13:52585200-52585600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr13:52585200-52585600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
47	chr13:52585200-52585600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr13:52585200-52585600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
49	chr13:52585200-52585600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr13:52585200-52585600	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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