Variant report

Variant	rs9563089
Chromosome Location	chr13:52601723-52601724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52585778..52588553-chr13:52601605..52603767,2	K562	blood:
2	chr13:52600061..52602835-chr13:52607989..52610209,4	K562	blood:

Variant related genes	Relation type
ENSG00000253710	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1004576	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1055062	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1060631	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs11616964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11620583	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12146904	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs12431310	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12584961	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1571189	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1801243	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.89[AMR][1000 genomes]
rs1801244	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs1886538	0.81[CHB][hapmap]
rs1886542	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.80[YRI][hapmap];0.90[ASN][1000 genomes]
rs1886543	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1886544	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1886547	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1924611	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1951922	0.88[AMR][1000 genomes]
rs1998696	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2004866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2181891	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes]
rs2274202	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs2277448	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2296347	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2296348	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[ASN][1000 genomes]
rs2296349	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs2296350	0.90[ASN][1000 genomes]
rs2408544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2408549	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2408550	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2408551	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2408552	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs2408554	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2408609	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[ASN][1000 genomes]
rs2408611	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[ASN][1000 genomes]
rs28393037	0.89[ASN][1000 genomes]
rs2897964	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs2897976	0.89[ASN][1000 genomes]
rs2897977	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[ASN][1000 genomes]
rs3368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[ASN][1000 genomes]
rs35895576	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3742288	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs3742289	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs3783242	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs3818422	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs3825527	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs3825528	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4297592	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4497567	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs4941727	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs55772266	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61958812	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6561656	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs6650383	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs723102	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs723103	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs732071	0.81[CHB][hapmap]
rs7320831	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7321120	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7321435	0.81[CHB][hapmap]
rs7324458	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7327634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7337430	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747781	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs750290	0.89[AMR][1000 genomes]
rs755363	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7981904	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7991237	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap]
rs7993492	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7994928	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7995946	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7998770	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs7999812	0.84[CEU][hapmap];0.82[AMR][1000 genomes]
rs9316563	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9526819	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9526821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526823	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9526825	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9526832	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9526837	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9526841	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9526842	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9535812	0.89[CEU][hapmap];0.81[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes]
rs9535817	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9535819	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535822	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535823	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535825	0.81[CHB][hapmap]
rs9535826	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535828	1.00[CEU][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535829	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535830	0.87[ASN][1000 genomes]
rs9535832	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs9535833	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535836	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9535849	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9535851	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9535856	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap]
rs9535858	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535860	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535861	0.82[CHB][hapmap]
rs9535862	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535866	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9535867	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535872	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9535873	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs9535878	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.80[YRI][hapmap];0.89[ASN][1000 genomes]
rs9535879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[ASN][1000 genomes]
rs9535880	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.90[ASN][1000 genomes]
rs9535882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[ASN][1000 genomes]
rs9535885	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[ASN][1000 genomes]
rs9535887	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.80[YRI][hapmap];0.88[ASN][1000 genomes]
rs9563084	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9563091	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563093	0.88[ASN][1000 genomes]
rs9568681	0.89[AMR][1000 genomes]
rs9568682	0.81[CHB][hapmap]
rs9568693	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568695	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568708	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568713	0.89[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv900082	chr13:52555288-52709938	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs9563089	NCRNA00282	cis	cerebellum	SCAN
rs9563089	ALG11	cis	Muscle Skeletal	GTEx
rs9563089	CKAP2	cis	parietal	SCAN
rs9563089	CKAP2	cis	cerebellum	SCAN
rs9563089	LOC440138	cis	multi-tissue	Pritchard
rs9563089	CKAP2	cis	multi-tissue	Pritchard
rs9563089	NEK3	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52588000-52609200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:52588000-52617400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr13:52588200-52602200	Weak transcription	Hela-S3	cervix
4	chr13:52589400-52605200	Strong transcription	Fetal Muscle Trunk	muscle
5	chr13:52589800-52603400	Strong transcription	Placenta	Placenta
6	chr13:52589800-52605400	Strong transcription	Fetal Thymus	thymus
7	chr13:52590000-52604400	Strong transcription	Primary T cells from cord blood	blood
8	chr13:52590200-52603400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr13:52590400-52602000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:52590600-52604200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr13:52591000-52604600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:52591600-52603400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:52591600-52603400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr13:52591600-52604000	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr13:52591800-52603600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:52591800-52603800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr13:52593600-52603000	Strong transcription	GM12878-XiMat	blood
18	chr13:52593600-52603200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr13:52593600-52603400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr13:52593800-52604200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr13:52593800-52604400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:52593800-52604600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr13:52594200-52601800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr13:52595000-52611200	Weak transcription	Psoas Muscle	Psoas
25	chr13:52595600-52605000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr13:52595600-52606600	Weak transcription	Brain Angular Gyrus	brain
27	chr13:52596600-52614000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr13:52597800-52603400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr13:52598000-52604000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr13:52598000-52604400	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr13:52598000-52604400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr13:52598200-52601800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:52598200-52602600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr13:52598200-52605400	Strong transcription	HSMM	muscle
35	chr13:52598200-52605600	Strong transcription	Fetal Brain Female	brain
36	chr13:52598200-52606000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr13:52598600-52602400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr13:52598800-52604600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr13:52598800-52606600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr13:52599000-52606400	Weak transcription	Brain Substantia Nigra	brain
41	chr13:52599000-52611000	Weak transcription	Fetal Brain Male	brain
42	chr13:52599200-52604600	Weak transcription	Fetal Heart	heart
43	chr13:52599200-52604600	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr13:52599400-52602400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr13:52599400-52603800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr13:52599400-52604400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
47	chr13:52599400-52604600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr13:52599600-52602400	Weak transcription	NH-A	brain
49	chr13:52599600-52604000	Weak transcription	Spleen	Spleen
50	chr13:52599600-52604400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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