Variant report

Variant rs3742289
Chromosome Location chr13:52603194-52603195
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:52588000-52609200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr13:52588000-52617400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr13:52589400-52605200 Strong transcription Fetal Muscle Trunk muscle
4 chr13:52589800-52603400 Strong transcription Placenta Placenta
5 chr13:52589800-52605400 Strong transcription Fetal Thymus thymus
6 chr13:52590000-52604400 Strong transcription Primary T cells from cord blood blood
7 chr13:52590200-52603400 Strong transcription Fetal Adrenal Gland Adrenal Gland
8 chr13:52590600-52604200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
9 chr13:52591000-52604600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr13:52591600-52603400 Strong transcription HUES48 Cell Line embryonic stem cell
11 chr13:52591600-52603400 Strong transcription Primary monocytes fromperipheralblood blood
12 chr13:52591600-52604000 Strong transcription HUES6 Cell Line embryonic stem cell
13 chr13:52591800-52603600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr13:52591800-52603800 Strong transcription Monocytes-CD14+_RO01746 blood
15 chr13:52593600-52603200 Strong transcription Primary T regulatory cells fromperipheralblood blood
16 chr13:52593600-52603400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr13:52593800-52604200 Strong transcription Primary hematopoietic stem cells short term culture blood
18 chr13:52593800-52604400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr13:52593800-52604600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr13:52595000-52611200 Weak transcription Psoas Muscle Psoas
21 chr13:52595600-52605000 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr13:52595600-52606600 Weak transcription Brain Angular Gyrus brain
23 chr13:52596600-52614000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
24 chr13:52597800-52603400 Strong transcription Duodenum Mucosa Duodenum
25 chr13:52598000-52604000 Strong transcription Primary B cells from peripheral blood blood
26 chr13:52598000-52604400 Strong transcription H1 Cell Line embryonic stem cell
27 chr13:52598000-52604400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
28 chr13:52598200-52605400 Strong transcription HSMM muscle
29 chr13:52598200-52605600 Strong transcription Fetal Brain Female brain
30 chr13:52598200-52606000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr13:52598800-52604600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr13:52598800-52606600 Weak transcription Rectal Smooth Muscle rectum
33 chr13:52599000-52606400 Weak transcription Brain Substantia Nigra brain
34 chr13:52599000-52611000 Weak transcription Fetal Brain Male brain
35 chr13:52599200-52604600 Weak transcription Fetal Heart heart
36 chr13:52599200-52604600 ZNF genes & repeats Fetal Muscle Leg muscle
37 chr13:52599400-52603800 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
38 chr13:52599400-52604400 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
39 chr13:52599400-52604600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr13:52599600-52604000 Weak transcription Spleen Spleen
41 chr13:52599600-52604400 Weak transcription Primary T killer naive cells fromperipheralblood blood
42 chr13:52599600-52605000 Weak transcription Placenta Amnion Placenta Amnion
43 chr13:52599800-52605800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr13:52600000-52604600 ZNF genes & repeats Fetal Intestine Small intestine
45 chr13:52600000-52605200 ZNF genes & repeats Fetal Stomach stomach
46 chr13:52600000-52609800 Weak transcription Stomach Mucosa stomach
47 chr13:52600200-52604000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr13:52600200-52613800 Weak transcription Colon Smooth Muscle Colon
49 chr13:52600200-52613800 Weak transcription Small Intestine intestine
50 chr13:52600400-52603200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell

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