Variant report

Variant rs2408544
Chromosome Location chr13:52588096-52588097
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:52585600-52588200 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr13:52586800-52590600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr13:52587000-52590600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr13:52587000-52590600 Weak transcription Pancreas Pancrea
5 chr13:52587000-52590600 Weak transcription Spleen Spleen
6 chr13:52587000-52590800 Weak transcription Gastric stomach
7 chr13:52587000-52593800 Weak transcription Left Ventricle heart
8 chr13:52587000-52593800 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr13:52587000-52594800 Weak transcription Lung lung
10 chr13:52587000-52598200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr13:52587000-52598800 Weak transcription Small Intestine intestine
12 chr13:52587000-52600000 Weak transcription Esophagus oesophagus
13 chr13:52587200-52588200 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
14 chr13:52587200-52588200 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr13:52587200-52588400 Flanking Active TSS Dnd41 blood
16 chr13:52587200-52590600 Weak transcription Aorta Aorta
17 chr13:52587200-52594600 Weak transcription Colonic Mucosa Colon
18 chr13:52587200-52600000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
19 chr13:52587400-52588200 Enhancers Primary T helper cells fromperipheralblood blood
20 chr13:52587400-52588200 Enhancers Primary T killer naive cells fromperipheralblood blood
21 chr13:52587400-52588200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr13:52587400-52588200 Enhancers Brain Anterior Caudate brain
23 chr13:52587400-52588200 Enhancers Brain Cingulate Gyrus brain
24 chr13:52587400-52589400 Weak transcription Fetal Muscle Trunk muscle
25 chr13:52587400-52589800 Weak transcription Placenta Placenta
26 chr13:52587400-52589800 Weak transcription Fetal Thymus thymus
27 chr13:52587400-52589800 Weak transcription Thymus Thymus
28 chr13:52587400-52590600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr13:52587400-52590600 Weak transcription Fetal Intestine Large intestine
30 chr13:52587400-52590600 Weak transcription Fetal Intestine Small intestine
31 chr13:52587400-52591800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr13:52587400-52593600 Weak transcription Primary B cells from peripheral blood blood
33 chr13:52587400-52593600 Weak transcription Ovary ovary
34 chr13:52587400-52593800 Weak transcription Primary T cells fromperipheralblood blood
35 chr13:52587400-52594000 Weak transcription Brain Germinal Matrix brain
36 chr13:52587400-52594400 Weak transcription Psoas Muscle Psoas
37 chr13:52587400-52595600 Weak transcription Placenta Amnion Placenta Amnion
38 chr13:52587400-52598200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr13:52587400-52598200 Weak transcription Right Ventricle heart
40 chr13:52587400-52598400 Weak transcription H9 Cell Line embryonic stem cell
41 chr13:52587400-52598800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr13:52587400-52600000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr13:52587600-52588200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr13:52587600-52588200 Enhancers Primary T helper 17 cells PMA-I stimulated --
45 chr13:52587600-52588200 Enhancers Cortex derived primary cultured neurospheres brain
46 chr13:52587600-52588200 Enhancers Adipose Nuclei Adipose
47 chr13:52587600-52588200 Enhancers Skeletal Muscle Female skeletal muscle
48 chr13:52587600-52588200 Flanking Active TSS GM12878-XiMat blood
49 chr13:52587600-52588200 Flanking Active TSS HepG2 liver
50 chr13:52587600-52588600 Enhancers Liver Liver

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