Variant report

Variant	rs1890200
Chromosome Location	chr6:145666741-145666742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1972364	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1972365	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2048236	0.82[EUR][1000 genomes]
rs2202848	0.82[EUR][1000 genomes]
rs4492209	0.80[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4895672	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4896791	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6570680	0.82[EUR][1000 genomes]
rs7751268	1.00[CEU][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7751389	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7773601	0.82[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145665400-145668200	Weak transcription	GM12878-XiMat	blood
2	chr6:145665600-145669000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:145665800-145669400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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