Variant report
| Variant | rs2048236 |
|---|---|
| Chromosome Location | chr6:145740819-145740820 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1118772 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1890200 | 0.89[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs1972364 | 0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1972365 | 0.89[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2202848 | 0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2202849 | 1.00[ASN][1000 genomes] |
| rs2328658 | 0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4492209 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4538734 | 1.00[ASN][1000 genomes] |
| rs4895672 | 0.89[CEU][hapmap] |
| rs4895673 | 1.00[ASN][1000 genomes] |
| rs4896791 | 0.89[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4896794 | 1.00[ASN][1000 genomes] |
| rs6570680 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6900171 | 1.00[ASN][1000 genomes] |
| rs6903361 | 0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6908878 | 1.00[ASN][1000 genomes] |
| rs7751268 | 0.89[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7751389 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7756319 | 1.00[ASN][1000 genomes] |
| rs7771768 | 1.00[ASN][1000 genomes] |
| rs7772490 | 1.00[ASN][1000 genomes] |
| rs7773601 | 0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7775733 | 1.00[ASN][1000 genomes] |
| rs9376920 | 1.00[ASN][1000 genomes] |
| rs9376931 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017166 | chr6:145677071-145808448 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv604838 | chr6:145709371-145841146 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145740400-145741400 | Weak transcription | Fetal Brain Female | brain |
| 2 | chr6:145740800-145749600 | Weak transcription | Fetal Brain Male | brain |
