Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1118772	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972364	1.00[ASN][1000 genomes]
rs1972365	1.00[ASN][1000 genomes]
rs2048236	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202848	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202849	1.00[ASN][1000 genomes]
rs4492209	1.00[ASN][1000 genomes]
rs4538734	1.00[ASN][1000 genomes]
rs4895673	1.00[ASN][1000 genomes]
rs4896791	1.00[ASN][1000 genomes]
rs4896794	1.00[ASN][1000 genomes]
rs6570680	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6900171	1.00[ASN][1000 genomes]
rs6903361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908878	1.00[ASN][1000 genomes]
rs7751268	1.00[ASN][1000 genomes]
rs7751389	1.00[ASN][1000 genomes]
rs7756319	1.00[ASN][1000 genomes]
rs7771768	1.00[ASN][1000 genomes]
rs7772490	1.00[ASN][1000 genomes]
rs7773601	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775733	1.00[ASN][1000 genomes]
rs9376920	1.00[ASN][1000 genomes]
rs9376931	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145725800-145726600	Enhancers	Brain Germinal Matrix	brain
2	chr6:145726000-145726800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:145726000-145726800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:145726000-145727000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:145726200-145726600	Weak transcription	Fetal Brain Female	brain

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