Variant report
| Variant | rs6908878 |
|---|---|
| Chromosome Location | chr6:145704346-145704347 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145698328..145700073-chr6:145704344..145706034,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1118772 | 1.00[ASN][1000 genomes] |
| rs1972364 | 1.00[ASN][1000 genomes] |
| rs1972365 | 1.00[ASN][1000 genomes] |
| rs2048236 | 1.00[ASN][1000 genomes] |
| rs2202848 | 1.00[ASN][1000 genomes] |
| rs2202849 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2328658 | 1.00[ASN][1000 genomes] |
| rs4492209 | 1.00[ASN][1000 genomes] |
| rs4538734 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4895673 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4896791 | 1.00[ASN][1000 genomes] |
| rs4896794 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62437751 | 1.00[ASN][1000 genomes] |
| rs6900171 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6903361 | 1.00[ASN][1000 genomes] |
| rs72993530 | 1.00[ASN][1000 genomes] |
| rs7751268 | 1.00[ASN][1000 genomes] |
| rs7751389 | 1.00[ASN][1000 genomes] |
| rs7756319 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7771768 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7772490 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7773601 | 1.00[ASN][1000 genomes] |
| rs7775733 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9376920 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9376931 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017166 | chr6:145677071-145808448 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv1813102 | chr6:145703134-145706388 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | esv3399809 | chr6:145703759-145708257 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv604824 | chr6:145704173-145706174 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 5 | esv3514614 | chr6:145704309-145707807 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv604825 | chr6:145704346-145706327 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 7 | esv1809243 | chr6:145704346-145706388 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 8 | esv1813402 | chr6:145704346-145706388 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 9 | nsv604826 | chr6:145704346-145706388 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6908878 | ADAT2 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145704000-145704400 | Enhancers | Fetal Intestine Small | intestine |
