Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145730739..145732534-chr6:145734082..145737759,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1118772	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890200	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs1972364	0.89[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972365	0.89[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048236	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202849	1.00[ASN][1000 genomes]
rs2328658	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4492209	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538734	1.00[ASN][1000 genomes]
rs4895672	0.89[CEU][hapmap]
rs4895673	1.00[ASN][1000 genomes]
rs4896791	0.89[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896794	1.00[ASN][1000 genomes]
rs6570680	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900171	1.00[ASN][1000 genomes]
rs6903361	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908878	1.00[ASN][1000 genomes]
rs7751268	0.89[CEU][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751389	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756319	1.00[ASN][1000 genomes]
rs7771768	1.00[ASN][1000 genomes]
rs7772490	1.00[ASN][1000 genomes]
rs7773601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775733	1.00[ASN][1000 genomes]
rs9376920	1.00[ASN][1000 genomes]
rs9376931	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145736600-145738400	Enhancers	Fetal Heart	heart

Quick Search: