Variant report

Variant	rs4492209
Chromosome Location	chr6:145669349-145669350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145667759..145669349-chr6:145686096..145687988,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1118772	1.00[ASN][1000 genomes]
rs1890200	0.80[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1972364	0.80[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972365	0.80[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048236	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202848	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2202849	1.00[ASN][1000 genomes]
rs2328658	1.00[ASN][1000 genomes]
rs4538734	1.00[ASN][1000 genomes]
rs4895672	0.92[ASW][hapmap];0.80[CEU][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4895673	1.00[ASN][1000 genomes]
rs4896791	0.80[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896794	1.00[ASN][1000 genomes]
rs62437751	1.00[ASN][1000 genomes]
rs6570680	0.80[EUR][1000 genomes]
rs6900171	1.00[ASN][1000 genomes]
rs6903361	1.00[ASN][1000 genomes]
rs6908878	1.00[ASN][1000 genomes]
rs72993530	1.00[ASN][1000 genomes]
rs7751268	0.80[CEU][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756319	1.00[ASN][1000 genomes]
rs7771768	1.00[ASN][1000 genomes]
rs7772490	1.00[ASN][1000 genomes]
rs7773601	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775733	1.00[ASN][1000 genomes]
rs9376920	1.00[ASN][1000 genomes]
rs9376931	1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145665800-145669400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:145668200-145670400	Enhancers	GM12878-XiMat	blood
3	chr6:145668600-145669400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:145668600-145669600	Enhancers	Brain Germinal Matrix	brain
5	chr6:145668800-145669600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:145669000-145669800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:145669200-145669400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:145669200-145669800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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