Variant report

Variant	rs1890326
Chromosome Location	chr1:211376211-211376212
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11119713	0.83[EUR][1000 genomes]
rs11803005	0.83[EUR][1000 genomes]
rs11806910	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12731366	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12756590	0.85[EUR][1000 genomes]
rs17267484	0.80[EUR][1000 genomes]
rs34355723	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34813082	0.83[EUR][1000 genomes]
rs35228985	0.83[EUR][1000 genomes]
rs35374835	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35995968	0.84[EUR][1000 genomes]
rs60096533	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66526219	0.83[EUR][1000 genomes]
rs6686281	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67437198	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7556054	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806574	chr1:211369721-211383129	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1808906	chr1:211369721-211383129	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211372600-211377200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:211374200-211377000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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