Variant report

Variant	rs17267484
Chromosome Location	chr1:211417709-211417710
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211416396..211423224-chr1:211428831..211433927,10	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11119713	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11803005	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11806910	0.89[EUR][1000 genomes]
rs12723208	0.89[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs12729996	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs12731366	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12743458	0.82[EUR][1000 genomes]
rs12752670	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs12754607	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs12754747	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs12756590	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188916	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs17188937	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs17267491	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs17267554	0.89[CEU][hapmap]
rs17267561	0.91[CEU][hapmap]
rs1890326	0.80[EUR][1000 genomes]
rs2280079	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs34027321	0.91[EUR][1000 genomes]
rs34140425	0.91[EUR][1000 genomes]
rs34251608	0.92[EUR][1000 genomes]
rs34256746	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34355723	0.80[EUR][1000 genomes]
rs34813082	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35228985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35374835	0.81[EUR][1000 genomes]
rs35791308	0.81[EUR][1000 genomes]
rs35995968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41275358	0.87[EUR][1000 genomes]
rs60096533	0.80[EUR][1000 genomes]
rs6540681	0.89[CEU][hapmap];0.88[CHB][hapmap]
rs66526219	0.95[EUR][1000 genomes]
rs6679980	0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs6686281	0.86[EUR][1000 genomes]
rs67437198	0.81[EUR][1000 genomes]
rs67764962	0.89[EUR][1000 genomes]
rs67772854	0.81[EUR][1000 genomes]
rs71640006	0.93[EUR][1000 genomes]
rs7556054	0.81[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211412800-211421400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:211415200-211418600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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