Variant report

Variant rs1899550
Chromosome Location chr4:152407236-152407237
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:152395000-152413200 Weak transcription Duodenum Mucosa Duodenum
2 chr4:152401600-152412200 Weak transcription Ovary ovary
3 chr4:152403200-152410000 Weak transcription Fetal Intestine Small intestine
4 chr4:152403200-152412600 Weak transcription Fetal Intestine Large intestine
5 chr4:152403600-152407600 Enhancers HSMMtube muscle
6 chr4:152404600-152407600 Enhancers H1 Cell Line embryonic stem cell
7 chr4:152405200-152407400 Enhancers HMEC breast
8 chr4:152405200-152407600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr4:152405400-152407800 Enhancers NH-A brain
10 chr4:152405600-152407600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
11 chr4:152405800-152407800 Enhancers Skeletal Muscle Male skeletal muscle
12 chr4:152405800-152410000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr4:152406000-152407400 Enhancers HUES6 Cell Line embryonic stem cell
14 chr4:152406000-152407600 Enhancers iPS-15b Cell Line embryonic stem cell
15 chr4:152406000-152407600 Enhancers iPS-18 Cell Line embryonic stem cell
16 chr4:152406000-152407800 Enhancers iPS-20b Cell Line embryonic stem cell
17 chr4:152406000-152407800 Enhancers Muscle Satellite Cultured Cells --
18 chr4:152406000-152410000 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr4:152406200-152409600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr4:152406200-152410800 Weak transcription Placenta Amnion Placenta Amnion
21 chr4:152406200-152410800 Weak transcription Hela-S3 cervix
22 chr4:152406400-152407600 Enhancers ES-I3 Cell Line embryonic stem cell
23 chr4:152406400-152407600 Enhancers HUES64 Cell Line embryonic stem cell
24 chr4:152406400-152409000 Enhancers HUES48 Cell Line embryonic stem cell
25 chr4:152406600-152407400 Enhancers Liver Liver
26 chr4:152406600-152407400 Enhancers Psoas Muscle Psoas
27 chr4:152406600-152407600 Enhancers H9 Cell Line embryonic stem cell
28 chr4:152406800-152407400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr4:152406800-152407400 Enhancers Skeletal Muscle Female skeletal muscle
30 chr4:152407000-152407400 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
31 chr4:152407000-152407400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr4:152407000-152407400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
33 chr4:152407000-152407400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr4:152407000-152407400 Enhancers Left Ventricle heart
35 chr4:152407000-152407400 Enhancers Pancreas Pancrea
36 chr4:152407000-152407600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
37 chr4:152407000-152410600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr4:152407200-152407400 Flanking Active TSS Osteobl bone
39 chr4:152407200-152407600 Enhancers ES-WA7 Cell Line embryonic stem cell
40 chr4:152407200-152407600 Flanking Active TSS HSMM muscle
41 chr4:152407200-152410800 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr4:152407200-152421600 Weak transcription NHEK skin

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