Variant report

Variant	rs1901549
Chromosome Location	chr11:86004941-86004942
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1452139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592277	0.91[AFR][1000 genomes]
rs7112457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123456	0.83[AFR][1000 genomes]
rs7126165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128001	0.82[AFR][1000 genomes]
rs7128483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946689	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
2	chr11:85995600-86012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:85995600-86012800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:85995800-86012600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:85995800-86013200	Weak transcription	Esophagus	oesophagus
6	chr11:85995800-86013200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:85996000-86012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:85996000-86013000	Weak transcription	Fetal Intestine Large	intestine
9	chr11:86000400-86005400	Enhancers	GM12878-XiMat	blood
10	chr11:86001200-86005200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:86002400-86005400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:86002600-86005400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:86003000-86012600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:86003200-86013000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links