Variant report

Variant	rs1452139
Chromosome Location	chr11:86002055-86002056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85996870..85999859-chr11:86001615..86003194,2	K562	blood:
2	chr11:86001868..86005047-chr11:86005098..86008545,3	K562	blood:
3	chr11:85997706..86000207-chr11:86001867..86004535,3	MCF-7	breast:
4	chr11:85565171..85567495-chr11:86001547..86003230,2	K562	blood:
5	chr11:85953789..85956159-chr11:86000092..86002736,3	K562	blood:
6	chr11:85989760..85992310-chr11:86001977..86004661,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150676	Chromatin interaction
ENSG00000074266	Chromatin interaction
ENSG00000215504	Chromatin interaction
ENSG00000255222	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1901549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3851188	0.90[YRI][hapmap]
rs6592277	0.91[AFR][1000 genomes]
rs7112457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116441	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123456	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7126165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7127311	1.00[YRI][hapmap]
rs7128001	0.82[AFR][1000 genomes]
rs7128483	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128843	1.00[YRI][hapmap]
rs7931056	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938966	0.89[YRI][hapmap]
rs7943278	1.00[YRI][hapmap]
rs7946689	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv508643	chr11:85988577-86047719	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85957400-86008000	Weak transcription	Psoas Muscle	Psoas
2	chr11:85975000-86002600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:85984400-86002800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:85986000-86002600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:85989600-86002800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:85989600-86002800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:85989600-86003000	Weak transcription	NH-A	brain
8	chr11:85990600-86002400	Weak transcription	HepG2	liver
9	chr11:85990800-86002600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:85991200-86002600	Weak transcription	Osteobl	bone
11	chr11:85991400-86002600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:85991400-86003200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:85991600-86002600	Weak transcription	NHDF-Ad	bronchial
14	chr11:85991600-86002800	Weak transcription	Placenta	Placenta
15	chr11:85992200-86003200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:85995600-86002600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:85995600-86002600	Weak transcription	HMEC	breast
18	chr11:85995600-86002800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:85995600-86002800	Weak transcription	A549	lung
20	chr11:85995600-86003000	Weak transcription	NHLF	lung
21	chr11:85995600-86012600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:85995600-86012800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:85995800-86002200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:85995800-86002400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:85995800-86002600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr11:85995800-86002800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:85995800-86012600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:85995800-86013200	Weak transcription	Esophagus	oesophagus
29	chr11:85995800-86013200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:85996000-86002800	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:85996000-86002800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:85996000-86012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:85996000-86013000	Weak transcription	Fetal Intestine Large	intestine
34	chr11:85996200-86002600	Weak transcription	Fetal Thymus	thymus
35	chr11:85997200-86002800	Weak transcription	Fetal Stomach	stomach
36	chr11:85998600-86003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:85999000-86002800	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr11:86000200-86002600	Weak transcription	K562	blood
39	chr11:86000200-86002800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:86000200-86003800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:86000400-86002600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:86000400-86002600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:86000400-86002800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:86000400-86005400	Enhancers	GM12878-XiMat	blood
45	chr11:86000600-86002800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:86001000-86002600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:86001000-86003200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:86001000-86004400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:86001000-86004800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:86001200-86002400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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